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Old 01-02-2016, 06:47 AM   #3
Location: P

Join Date: Apr 2014
Posts: 18

Do you need CPM per each sample after TMM normalization?
you could do something like this
cpm <- cpm(d, log=TRUE, lib.sizes=lib.sizes, normalized.lib.sizes = TRUE, prior.count=0.25)
if your cpm values are negative then you can set the prior.count to a different value
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