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Old 02-08-2017, 01:54 PM   #1
luisnagano
Junior Member
 
Location: Campinas, Brazil

Join Date: Feb 2017
Posts: 1
Smile Find Chip-seq targets in Rna-seq data?

Hi, I want to select my target genes found in my ChIP-seq data (Genes Names by HOMER) within my Cuffdiff output list of differentially expressed genes (RNA-seq data), so I can select cufflinks genes ids of target genes (“XLOC_” ids), selecting the lines table from my cuffdiff file where are the specific target genes names, so I can create heatmaps of these genes using RNA-seq data in R. Can someone give me a simple solution?
I just want select gene names lines in my cuffdiff table

Thank you!

Last edited by luisnagano; 02-08-2017 at 02:59 PM. Reason: improve information message
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