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Old 11-02-2010, 08:12 AM   #1
dan
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Location: Cambridge, England

Join Date: Jul 2008
Posts: 266
Default Comparing genotyping chips to deep sequencing?

Hi all,

I'm looking for any literature that compares SNP genotyping chips (such as infinium or illumina genotyping platforms) to 'deep sequencing' datasets such as WGS or RNASeq (and the subsequent SNP calling using SAMTools or similar).

I've seen a few human genome papers where the authors also include a SNP chip analysis (probably because it's so cheap compared to WGS), but I'm not sure of any specific studies or meta-studies.

Thanks for any pointers,
Dan.
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