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Old 11-02-2010, 11:30 AM   #2
krobison
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Location: Boston area

Join Date: Nov 2007
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Some genome centers (e.g. WashU) use the SNP chip info as a quality check, sample identity check & also to determine if they have gone deep enough.

I found this reference that did a direct comparison; I believe there are more
http://www.ncbi.nlm.nih.gov/pubmed/19420381
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