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Old 09-11-2009, 02:38 AM   #5
AlexB
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Location: Netherlands

Join Date: Sep 2009
Posts: 18
Default quant coverage

Thanks flxlex,
good suggestions. I indeed intended tolok at the assembly and coverage of that specific contigs. I just find the numbers for repeats so high. In the latter 800 fold coverage was a transposase IS4.....
Didn't know newbler could do that. I will install the software shortly on our linux machine and see how it goes.
Alex
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