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Old 01-25-2013, 03:20 PM   #6
_y_s
Junior Member
 
Location: Rabat, Morocco

Join Date: Jul 2012
Posts: 6
Default Error

I have another error while executing consed for the first time. Here is the command line followed by the warnings that I've got:

root@ubuntu:/usr/local/genome/examples# consed

no ~/consedrc file so no user resources will be used--that's ok
no consedrc file so no project-specific resources--that's ok
couldn't open readOrder.txt--that's ok
not setting XKEYSYMDB. This is ok if you don't get any errors saying something about "Warning: translation table..."Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfBeginLine
Warning: ... found while parsing ':<Key>osfBeginLine: ManagerGadgetTraverseHome()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfSelect
Warning: ... found while parsing ':<Key>osfSelect: ManagerGadgetSelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfSelect
Warning: ... found while parsing ':<Key>osfSelect: MenuBarGadgetSelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: ManagerParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfHelp
Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfHelp
Warning: ... found while parsing ':<Key>osfHelp: Help()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfCancel
Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfSelect
Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfSelect
Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfCancel
Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfSelect
Warning: ... found while parsing ':<Key>osfSelect: ArmAndActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfHelp
Warning: ... found while parsing ':<Key>osfHelp: ManagerGadgetHelp()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
Warning: ... found while parsing ':m <Key>osfPrimaryPaste:cut-primary()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfBeginLine
Warning: ... found while parsing ':s c <Key>osfBeginLine: ListBeginDataExtend()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfActivate
Warning: ... found while parsing ':<Key>osfActivate: PrimitiveParentActivate()'
Warning: String to TranslationTable conversion encountered errors
Warning: translation table syntax error: Unknown keysym name: osfPrimaryPaste
Warning: ... found while parsing ':m <Key>osfPrimaryPaste:cut-primary()'
Warning: String to TranslationTable conversion encountered errors
Fatal: The parent directory must contain either phdball_dir or else phd_dir, but it doesn't. A typical directory structure is a directory named after the project, with subdirectories named edit_dir (containing the ace files), solexa_dir (containing the solexa *_seq.txt and *_prb.txt files), sff_dir (containing the 454 sff files or links to them), phdball_dir (containg the phdballs), and chromat_dir (containing chromats of any gel-based reads). Obviously you don't need all of these. Consed is run from within edit_dir.
Version 23.0 (120514)
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