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Old 03-04-2012, 09:17 PM   #4
nilshomer
Nils Homer
 
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Location: Boston, MA, USA

Join Date: Nov 2008
Posts: 1,285
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Updated #s on a few commands:
Command samtools psamtools
view BAM 29.45 19.2
view -b BAM 207.51 19.36
view -S SAM 44.89 44.43
view -Sb SAM 222.64 32.62
sort 206.32 25.17
mpileup 6574.2 7252.08
depth 17.64 7.47
index 11.96 1.93
flagstat 11.73 1.73
calmd -b 209.25 22.86
rmdup -s 154.88 22.08
reheader 0.76 0.74
cat 1.54 1.37
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