Dear all,
I am analyzing a RNA-seq experiment including more than 2 conditions. As discussed in this topic, I have created a global exonCountSet, including all conditions and their replicates, to estimate a pooled dispersion from all samples:
Next, I would like to perform comparisons between specific pairs of conditions included in this exonCountSet object, but I am unsure how to do this... Is this through modified formulas (formula0 and formula1) given to the function testGeneForDEU?
Thanks for your help
Julien
I am analyzing a RNA-seq experiment including more than 2 conditions. As discussed in this topic, I have created a global exonCountSet, including all conditions and their replicates, to estimate a pooled dispersion from all samples:
Next, I would like to perform comparisons between specific pairs of conditions included in this exonCountSet object, but I am unsure how to do this... Is this through modified formulas (formula0 and formula1) given to the function testGeneForDEU?
Thanks for your help
Julien
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