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Old 09-26-2017, 11:18 AM   #3
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,049

Did your facility use software from 10x genomics (cellranger mkfastq) to do the demultiplexing of the data? You should ideally use the entire pipeline to process the data from sequences to counts at end. You can find information about the pipeline 10x supplies here.
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