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Old 03-14-2016, 08:27 AM   #41
oxydeepu
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Location: bangalore,india

Join Date: Jul 2011
Posts: 41
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Dear Eric,

CNVkit worked when I used the older version of pysam. Now I have a doubt regarding running CNVkit. I have 20 samples with matched tumor and normal. Do I make reference from all normal samples and run each tumor sample or run individually? Sorry about naive question.

Thank you.

Best,
Deepak
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