SEQanswers - View Single Post - CNVkit: Copy number detection and visualization for targeted sequencing using off-tar

oxydeepu · 03-14-2016, 08:27 AM

Dear Eric,

CNVkit worked when I used the older version of pysam. Now I have a doubt regarding running CNVkit. I have 20 samples with matched tumor and normal. Do I make reference from all normal samples and run each tumor sample or run individually? Sorry about naive question.

Thank you.

Best,
Deepak

03-14-2016, 08:27 AM	#41
oxydeepu Member Location: bangalore,india Join Date: Jul 2011 Posts: 41	Dear Eric, CNVkit worked when I used the older version of pysam. Now I have a doubt regarding running CNVkit. I have 20 samples with matched tumor and normal. Do I make reference from all normal samples and run each tumor sample or run individually? Sorry about naive question. Thank you. Best, Deepak