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Old 09-18-2009, 08:11 AM   #10
warrenemmett
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Location: South Africa

Join Date: Nov 2008
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Although there are definitely many more reads mapped for single-end, when I look at the rpkm values the paired end data, produces values 100-300 higher (just browsed through the top few genes)single-end.

Can anyone take a stab at what reasons for this are ? although less reads are mapped does it manage to give a more specific result in this case?
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