Thread: SOAPdenovo
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Old 06-16-2013, 11:08 PM   #6
Linnea
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Location: Uppsala, Sweden

Join Date: Mar 2010
Posts: 23
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Quote:
Originally Posted by osha84 View Post
I also did the same but it keeps giving me [LIB] command not found error. does anyone know how to solve this problem please.
Did you get "[LIB] command" not found? First I read "[LIB] not found" and interpreted it as SOAP didn't find the fastq file - I had that problem and it helped when I added the full path instead of "~"-annotation (changing ~/soap/file.fastq to /home/linnea/soap/file.fastq).
The format of the config file is quite strict, for example you are not allowed to have any extra blank lines in the end.

But if it says command not found it sounds like it's trying to run the config file or something.. What command did you use for starting SOAP?
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