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Old 06-12-2019, 06:56 PM   #1
Location: USA

Join Date: Sep 2012
Posts: 22
Default Extract reads contains repeats

I MiSeqed heterogeneous templates amplified via rolling cycle amplification (RCA) by a specific 6-nt primer. PE reads were merged into single ones around 500 nt. As a consequence of RCA, some of them consist of 100-200 nt repeats from short-size templates. Is anyone aware of tools that can process, extract, and consensus these kinds of reads? Many thanks.
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