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Old 09-04-2012, 02:00 AM   #1
JonB
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Location: Norway

Join Date: Jan 2010
Posts: 83
Default TopHat error: could not open writer pipe gzip

Hi,

I am running TopHat on my MacBook Air. Everything seemed to be running fine, but after maybe 30min of "Mapping left_kept_reads to genome" it stopped with this error message:

Error: could not open writer pipe gzip -cf - < ./tophat_out/tmp/left_kept_reads_seg123.fq.z

Anyone know what this means?

Thanks!

Jon
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