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Old 10-13-2013, 09:51 AM   #5
danielecook
Junior Member
 
Location: Chicago

Join Date: Oct 2013
Posts: 8
Smile Thanks for the tips

I appreciate the feedback. We do have a supercomputer here I can make use of, and I do have some experience with Amazon in the cloud.

Actually - the data I am working with is already aligned (it's bed files).

I think my plan of attack here then will be to call peaks outside of R and then split up the bed file into individual chromosomes for the purposes of visualizing peaks (with Gviz) along with other tracks of interest. Does this workflow similar to anything anyone else has done? I really appreciate your responses.

Thanks so much!
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