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Old 10-12-2011, 12:38 PM   #1
alpesh
Junior Member
 
Location: Iowa

Join Date: Oct 2011
Posts: 7
Default Extracting reads from BAM files

Hi All,

I am new to samtools and some help will be awesome.

I have BAM files and I have a long list of loci which I want to extract reads for. Basically I want to pass a lot a loci in the regions parameter of samtools view.
I am guessing its a 1 liner code in samtools?

Thanks,
Alpesh
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