I am going to clean some exome sequence data (paired-end) generated by Illumina using FastX-toolkit. Could you please suggest a good procedure, for instance,
1. fastx_clipper
2. fastx_quality_filter
3. fastx_quality_trimmer
...?
I am confused about the steps as well as the order.
Thanks very much!
1. fastx_clipper
2. fastx_quality_filter
3. fastx_quality_trimmer
...?
I am confused about the steps as well as the order.
Thanks very much!
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