Hi
I'm trying to map transcriptome data on a refference genome and generate the output in SAM format. The problem: when I run it, says:
and the sam file is empty.
What does this mean? and How can I fix this?
Thanks
P.D.: I'm running the 2.5 version.
I'm trying to map transcriptome data on a refference genome and generate the output in SAM format. The problem: when I run it, says:
Code:
SSAHA2: Reading hashtable reference into memory. SSAHA2: Hashtable size : 0.001007 GB SSAHA2: Number of sequences : 1 SSAHA2: K-mer length : 13 SSAHA2: Skip step : 3 SSAHA2: Max. sequence length: 755119 position_table - Query probably contains unusual characters! : Success
What does this mean? and How can I fix this?
Thanks
P.D.: I'm running the 2.5 version.
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