Hi, all -
I'm looking for a program that will allow me to collapse paired-end FASTA reads into a single entry if the original reads overlap. For example, if I started with these reads:
>read/1
TCACAGCTGTATGCTAAACTAGATCTAGGTATGTGTGTGGGGTGGGGCTG
>read/2
CCACAATATGGGTGTAGACTTCAGCCCCACCCCACACACATACCTAGATC
...then I'd need it to produce a single entry, like this:
TCACAGCTGTATGCTAAACTAGATCTAGGTATGTGTGTGGGGTGGGGCTGAAGTCTACACCCATATTGTGG
Does anyone have any suggestions of a program that could do this? Thanks!
I'm looking for a program that will allow me to collapse paired-end FASTA reads into a single entry if the original reads overlap. For example, if I started with these reads:
>read/1
TCACAGCTGTATGCTAAACTAGATCTAGGTATGTGTGTGGGGTGGGGCTG
>read/2
CCACAATATGGGTGTAGACTTCAGCCCCACCCCACACACATACCTAGATC
...then I'd need it to produce a single entry, like this:
TCACAGCTGTATGCTAAACTAGATCTAGGTATGTGTGTGGGGTGGGGCTGAAGTCTACACCCATATTGTGG
Does anyone have any suggestions of a program that could do this? Thanks!
Comment