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Old 11-02-2010, 06:17 AM   #6
mudshark
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Location: Munich

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very good point. we only sequence the input as a reference. of course that does not control for any bias in unspecific bead-binding etc. an IgG control has its own bias anyway.

in ChIPchip the standard is to use the input as a reference. why should this be a bad choice for ChIPSeq?
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