[jdanderson]

Hello All,

How are some of you visualizing the Cuffdiff output files?

Is it just a matter of parsing (via a script) the FPKM and p-values out of the file and visualizing them in something akin to R?

Is anyone ranking there outputs according to p-values or is everyone just going with the log of FPKM values?

Any guidance or suggestions would be most appreciated.

Cheers,
Johnathon