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Old 10-07-2010, 06:40 PM   #1
jdanderson
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Location: Davis, CA

Join Date: Sep 2010
Posts: 45
Default Cuffdiff Visualization

Hello All,

How are some of you visualizing the Cuffdiff output files?

Is it just a matter of parsing (via a script) the FPKM and p-values out of the file and visualizing them in something akin to R?

Is anyone ranking there outputs according to p-values or is everyone just going with the log of FPKM values?

Any guidance or suggestions would be most appreciated.

Cheers,
Johnathon
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