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Old 10-10-2010, 07:24 PM   #2
jdanderson
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Location: Davis, CA

Join Date: Sep 2010
Posts: 45
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Hello All,

Just wondering if anyone could provide some type of feedback on how they are visualizing the Cuffdiff gene and isoform FPKM values? I've written a script to parse and sort the log of FPKMy/FPKMx along with its chromosomal location, filtering out the ones that aren't called significant. I ended up with over 900 genes still and I was wondering how people have been dealing with this kind of data outside of heatmaps, and how they were dealing with representing differential isoform expression?

Any thoughts on the matter would be most appreciated.

Regards,
Johnathon
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