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Old 02-11-2019, 02:20 PM   #4
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,885
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BBSplit will take fastq reads and bin them. Let me know how that works.

You can convert the merged fastq reads afterwards with
Code:
reformat.sh in=merged.fq.gz out=merged.fa
No paste/cut/sed needed :-)
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