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Old 11-08-2009, 02:13 PM   #3
Junior Member
Location: Melbourne

Join Date: May 2008
Posts: 7

I've written some software that can do this for bacteria. Doesn't work with eukaryotes though, various scalability issues yet to be overcome.

The approach I took was just to generate all the before and after protein sequences and look for differences. Pretty easy to do in BioPerl/BioPython/etc.
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