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Old 11-29-2010, 04:03 AM   #5
Junior Member
Location: Italy

Join Date: Oct 2008
Posts: 6
Default Soap de novo .afg file

Hello Sunder,

to get the.afg you need to tell SoapDeNovo to generate it. In other words you need to turn the amos_file switch on (beware..the .afg it's a LARGE file):

./velvetg output_directory/ -amos_file yes

Then you can have a look at it with Tablet or other viewers (beware #2: it will usually take quite a lot of time to generate the .afg output in the GUI viewer).

Hope it helps,
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