Soap de novo .afg file
Hello Sunder,
to get the.afg you need to tell SoapDeNovo to generate it. In other words you need to turn the amos_file switch on (beware..the .afg it's a LARGE file):
./velvetg output_directory/ -amos_file yes
Then you can have a look at it with Tablet or other viewers (beware #2: it will usually take quite a lot of time to generate the .afg output in the GUI viewer).
Hope it helps,
Rocco
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