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Old 05-21-2011, 06:38 PM   #1
nitinkumar
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Location: UK

Join Date: Feb 2011
Posts: 11
Default Consensus sequence

I compare some 454 reads with a reference genome using blastn with ungapped alignment. I have converted the blast reslts into fasta format. Now I want to convert the reads (output of blast) into consensus sequence. I tried the bioperl module Bio::SimpleAlign but that didn't work. Need some suggestions......
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