Hi! I'm trying to add 454 reads and I got an error:
Is somebody have an idea why I get this error? I use consed 23.
Thanks!
Code:
antony@ubuntu:~/Desktop/CONSED/edit_dir$ add454Reads.perl HAFNleavi_AllContigs.ace SFF.fof HAFNleavi_AllContigs.fna extracting reads from sff file ../sff_dir/HBY09XS02.default.RL2.sff... executing: /usr/local/genome/bin/consed -sff2PhdBall ../sff_dir/HBY09XS02.default.RL2.sff -phdBall ../phdball_dir/phd.ball.1 -sff2PhdBall will be run. no ~/consedrc file so no user resources will be used--that's ok no consedrc file so no project-specific resources--that's ok couldn't open readOrder.txt--that's ok complementing LoxP because it is not palindromic not complementing linker because it is palindromic extracting all reads from sff file ../sff_dir/HBY09XS02.default.RL2.sff Now processing sff file ../sff_dir/HBY09XS02.default.RL2.sff number_of_reads = 175771 .....couldn't execute /usr/local/genome/bin/consed -sff2PhdBall ../sff_dir/HBY09XS02.default.RL2.sff -phdBall ../phdball_dir/phd.ball.1 at /usr/local/genome/bin/add454Reads.perl line 110, <filSffFof> line 1.
Thanks!
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