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Old 02-12-2015, 04:19 AM   #3
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,062

It is always better to start with protein sequence when you are working with an unknown gene sequence. Start with Swissprot/Uniprot/RefSeq ( to see if you are able to find a conserved domain (or something that looks like one) even if the rest of the sequence match is not great.
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