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Old 04-08-2015, 01:01 AM   #1
kaps
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Location: Uganda

Join Date: Jan 2015
Posts: 71
Default Calculating percentage of reads aligning to a subject

I have done a blast on virus contigs and obtained hits matching to virus (strains/isolates) in the database. I would like to calculate the percentage of reads that are aligning to the viruses in the database. Can someone guide me on how to do this?
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