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Old 04-14-2015, 12:23 AM   #6
Michael.Ante
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Location: Vienna

Join Date: Oct 2011
Posts: 123
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Quote:
Originally Posted by kaps View Post
Thanks Michael,

I have not used Bowtie/ samtools before. How do I start off?
Hi Kaps,

you should have a look at the Bowtie2 homepage. There, it is explained in detail how the programs work. At the end of the manual is a "Lambda phage example", which has quite an overlap to your problem. It also has a SAMtools downstream section...

Cheers,
Michael
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