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Old 04-27-2016, 06:07 AM   #3
Location: US

Join Date: Jul 2013
Posts: 55

My biological question is how do genotype A and B respond differently to the treatment. I need to take both factors into account. I wan't to know what's the difference between doing multifactor (condition*genotype) or treat vs control in A and treat vs ctl in B and compare the list of genes. Basically if I do the latter I get more genes differentially expressed than in the former.

How do I interepret biologically the results of the two approaches?
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