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Old 06-10-2010, 12:55 PM   #3
sklages
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Location: Berlin, DE

Join Date: May 2008
Posts: 628
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Quote:
Originally Posted by Bio.X2Y View Post
However, I don't think it makes any sense to create a fasta file "containing the quality scores". Fasta files are used to represent sequences.
... and their corresponding qualities ..

mySeq.fasta :
>mySeq
ACGTACGT

mySeq.fasta.qual:
>mySeq
22 22 33 33 22 22 33 44

There are still some programs which need to be fed with fasta/qual :-)

Anyway, qualities need to be converted to phred-stye ..
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