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Old 02-13-2019, 11:45 AM   #2
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,062
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The directory you have the program "fastq-dump" is likely not in your $PATH ( a set of directories that are automatically searched when you try to run something). You could try ./fastq-dump if the executable is in the directory where you are running this from.

I suggest you save yourself the hassle and download fastq files directly from EBI-ENA here.

You may want to learn unix basics by using this tutorial, if you are not familiar with command line.
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