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Old 02-19-2019, 09:59 AM   #1
Location: Italy

Join Date: Jul 2017
Posts: 34
Default samtools index file error


I have to post process the outcome STAR file .bam but when I go to create an index for it I have an error with samtools,

Patrizios-MBP:star patrizio$ samtools index SRR359063.bam
dyld: Symbol not found: _stdscr
  Referenced from: /Users/patrizio/anaconda3/bin/samtools
  Expected in: /Users/patrizio/anaconda3/bin/../lib/libncursesw.6.dylib
 in /Users/patrizio/anaconda3/bin/samtools
Abort trap: 6

I read online and seems to be related with anaconda but I don't know how to fix it, anyone experienced that?

thank you

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