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Old 11-08-2013, 06:02 AM   #3
MurielGB
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Location: Montpellier, France

Join Date: Oct 2013
Posts: 51
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OK thanks !

But since I already used bwa to generate the BAM file for each sample which corresponds to the alignement of forward, reverse and single reads, how can I do this ?
I don't think I can separate those three groups in a BAM file can I ?
Because I juste wanted to use AddOrReplaceReadGroups and not to re-use bwa (which would be much longer...)

Next time, I will know that I should have specified the RG before but what about those already mapped reads ?

Thanks !
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