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Old 11-08-2013, 06:16 AM   #6
lindenb
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Location: France

Join Date: Apr 2010
Posts: 143
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Quote:
define pair.generateId, pair.sample.lib etc.. at the beginning of the script so that after you can use this line right ?
yes.

I use https://github.com/lindenb/jvarkit/wiki/Illuminadir to generate a JSON description of my FASTQs and I then use https://github.com/lindenb/jsvelocity to generate my scripts.
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