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Old 11-08-2013, 06:58 AM   #8
Location: Montpellier, France

Join Date: Oct 2013
Posts: 51

Hey I come back to you since I had a look on bwa.
I seems that naming RG with bwa is during the process sampe and samse.
But during sampe you give both forward and reverse fastq files at the same time so how can you give different read names to F and R ?
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