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Old 11-28-2014, 05:51 AM   #1
dena.dinesh
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Location: Europe

Join Date: Feb 2013
Posts: 58
Default Trimming multiple adapters in a single run

Hi,

I ran the quality control for my fastq reads and found that some adapter seuqences in every sample. I used Fastx_clipper like this:
fastx_clipper -a "AGTCGTATAGCAGT" -v -i /input/fastq/file -o /trimmed/output/file.

How can I trim the fastq file with multiple adapter.. i have one more adapter sequnces which has to be trimmed.

How can I use multiple adapters in a single run?

Kindly Guide me.
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