View Single Post
Old 11-28-2014, 06:23 AM   #4
blancha
Senior Member
 
Location: Montreal

Join Date: May 2013
Posts: 367
Default

No.
You'll have to check the behaviour of your trimmer.
In the case of Cutadapt, you just need to trim the first adapter.

You don't need to know all the adapter sequences. You just need to know and trim the sequence of the first adapter after the insert.

E.g. The adapter sequence is TAAC

Before trimming:
ATCATAACAT
CTAGTAACTT

After trimming:
ATCA
CTAG
blancha is offline   Reply With Quote