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Old 11-30-2017, 09:14 AM   #2
IBseq
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Location: uk

Join Date: Jul 2012
Posts: 56
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hi
did you get an answer?

ib


Quote:
Originally Posted by ashNZ View Post
Gday all,

I am attempting to use SOAPsnpZ to call SNPs from SOLiD data that I aligned using SOAP2. After conducting the alignment I 'sorted' the output .txt file and when I try to feed it into the SNP caller I am getting this error message pretty much straight after program execution:


Reading Chromosome and dbSNP information Done.
terminate called after throwing an instance of 'std:ut_of_range'
what(): basic string::substr


Can anyone help me to solve this problem? It would be greatly appreciated! This is my first time using SOAP so I am still very much a beginner.

Cheers
Ash
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