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Old 04-14-2011, 07:12 PM   #5
Nils Homer
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Originally Posted by n00c View Post
BWT-based mappers are theoretically fastest ones up until certain read length (don't remember exactly, but something like 400-1000 bp). There is a bunch of papers out there describing this.
In theory no, in practice yes. Short read mappers are heuristics, where as something like BWT-SW is not.
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