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Old 01-13-2012, 04:49 AM   #3
Andrea Apolloni
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Location: Italy

Join Date: Jan 2012
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Thanks for the clarification, Simon.

So fitType="local" may be safely used when fitType="parametric" does not fails?

My doubt is because in the vignette (chapter "Working without Any replicates") you don't sum the counts of the pasilla dataset, but you arbitrarily choose to use only two samples (one per condition).
You make this choice to "simulate" a dataset in which there isn't any kind of replicates?
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