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Old 01-13-2012, 04:58 AM   #4
Simon Anders
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Location: Heidelberg, Germany

Join Date: Feb 2010
Posts: 994

Originally Posted by Andrea Apolloni View Post
So fitType="local" may be safely used when fitType="parametric" does not fails?
Yes. This is what the warning recommends, and, actually, I am not even sure yet which fit type I'd prefer.

My doubt is because in the vignette (chapter "Working without Any replicates") you don't sum the counts of the pasilla dataset, but you arbitrarily choose to use only two samples (one per condition).
You make this choice to "simulate" a dataset in which there isn't any kind of replicates?
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