View Single Post
Old 01-19-2012, 07:57 AM   #2
peromhc
Senior Member
 
Location: Durham, NH

Join Date: Sep 2009
Posts: 108
Default

I should note that 'social.bam' is just a product of samtools merge for all the individuals in the social treatment.. Those bamfiles are listed individually in Cuffdiff-- to indicate that there are biological replicates.

So, in essence, the FPKM from social.bam from cufflinks should be the average value from all the individuals in that group.
peromhc is offline   Reply With Quote