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Old 01-19-2012, 07:57 AM   #2
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Location: Durham, NH

Join Date: Sep 2009
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I should note that 'social.bam' is just a product of samtools merge for all the individuals in the social treatment.. Those bamfiles are listed individually in Cuffdiff-- to indicate that there are biological replicates.

So, in essence, the FPKM from social.bam from cufflinks should be the average value from all the individuals in that group.
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