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kopi-o · 02-03-2012, 02:00 PM

I think it uses it for flagging reads as "properly paired" in the output BAM/SAM file. There may be other ways it uses it but I don't know about those.

02-03-2012, 02:00 PM	#2
kopi-o Senior Member Location: Stockholm, Sweden Join Date: Feb 2008 Posts: 319	I think it uses it for flagging reads as "properly paired" in the output BAM/SAM file. There may be other ways it uses it but I don't know about those.