Hello!
I used RAST to annotate my bacterial genomes and am now having trouble with the output files in Artemis. Artemis seems to be having trouble with the fact that I have multiple contigs and is putting all the genes on the first contig so they all end up on top of each other. If I reduce the annotation file to just the genes in the first contig though it isn't correctly putting the genes in the reading frames so there seems to be multiple problems going on. I have played around with all the different file outputs but they all seem to have problems.
Anyone know how to fix this?
Thanks!
I used RAST to annotate my bacterial genomes and am now having trouble with the output files in Artemis. Artemis seems to be having trouble with the fact that I have multiple contigs and is putting all the genes on the first contig so they all end up on top of each other. If I reduce the annotation file to just the genes in the first contig though it isn't correctly putting the genes in the reading frames so there seems to be multiple problems going on. I have played around with all the different file outputs but they all seem to have problems.
Anyone know how to fix this?
Thanks!
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