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Old 09-14-2021, 09:18 AM   #689
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Join Date: Sep 2021
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Originally Posted by HESmith View Post
"Exception in thread "main" java.lang.AssertionError: Attempting to output paired reads to different sam files."

Typically, BBMap tools keep paired reads together. You're attempting to write aligned and unaligned reads to separate files, which violates that function.
Thank you !
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