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Old 07-14-2011, 08:41 AM   #1
shuang
Senior Member
 
Location: IL

Join Date: Jul 2011
Posts: 100
Default error from SOAPdenovo

When I tried to run SOAPdenovo with a command "./SOAPdenovo all -s SB1.config -K 25 -o output", I received an error message of "-bash: ./SOAPdenovo: No such file or directory".

Why?



This is the content of SB1.config.

#maximal read length
# Lines start with '#' are ignored by the assembler
max_rd_len=50
[LIB]
avg_ins=2000
reverse_seq=1
asm_flags=2
rank=2
# cutoff of pair number for a reliable connection
#(default 5 for large insert size)
pair_num_cutoff=5
#minimal mapped length to contigs for a reliable read location
#(default 35 for large insert size)
map_len=35
q1=/Users/Steve/bin/SOAPdenovo_1.03/SB_short.fastq

Last edited by shuang; 07-14-2011 at 08:43 AM. Reason: wrong title
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