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Old 06-01-2010, 11:46 AM   #2
Nils Homer
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Location: Boston, MA, USA

Join Date: Nov 2008
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Originally Posted by albrown415 View Post
What is the best program to use for converting fastq (or eland extended) files to SAM format? Thanks!
Do you want to align the data first, or just represent the FASTQ data in the SAM format? Is the data paired end (mate-pair)?
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