Hello all,
After installing Bio Linux and running the test data: it says that I don't have bowtie2 but bowtie2 by itself is working just fine.
What is the default location that Tophat 2 accesses Bowtie2 from? Also, is there a way to change the paths that Tophat 2 accesses it's external binaries from after Tophat 2 has already been compiled? (Samstools, Boost, Bowtie etc)?
Thanks, any constructive responses will be greatly appreciated.
I've spent a lot of time on this but I'm just hitting my head against the wall.
After installing Bio Linux and running the test data: it says that I don't have bowtie2 but bowtie2 by itself is working just fine.
What is the default location that Tophat 2 accesses Bowtie2 from? Also, is there a way to change the paths that Tophat 2 accesses it's external binaries from after Tophat 2 has already been compiled? (Samstools, Boost, Bowtie etc)?
Thanks, any constructive responses will be greatly appreciated.
I've spent a lot of time on this but I'm just hitting my head against the wall.
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